Suprachiasmatic nucleus (SC<em>N</em>) controls various physiological, endocrine and behavioral functions by regulating conversion of serotonin (<em>5</em>-HT) to melatonin (MEL). Aging leads to alterations in the neural and temporal organization of the SC<em>N</em> leading to circadian dysfunction. Age-induced stoichiometric alterations in daily chronomics of various components of <em>5</em>-HT metabolism were studied by constructing interactomes between parameters. The levels of tryptophan (TRP), <em>5</em>-hydroxytryptophan (<em>5</em>-HTP), <em>5</em>-hydroxytryptamine (<em>5</em>-HT), <em>N</em>-<em>acetyl</em>serotonin (<em>N</em>AS), <em>N</em>-<em>acetyl</em> <em>5</em>-<em>methoxytryptamine</em> (MEL), <em>5</em>-hydroxyindoleacetic acid (<em>5</em>-HIAA), <em>5</em>-methoxyindole acetic acid (<em>5</em>-MIAA), <em>5</em>-hydroxytryptophol (<em>5</em>-HTOH), <em>5</em>-methoxytryptophol (<em>5</em>-MTOH) and <em>N</em>-<em>acetyl</em>tryptamine (<em>N</em>AT) were measured at (Zeitgeber time 0, 6, 12 and 18) in male rat SC<em>N</em> of 3, 12 and 24 months age groups. Age-induced decrease was observed in mean levels of <em>N</em>AS, MEL, <em>5</em>-HIAA, <em>5</em>-MIAA, <em>5</em>-MTOH, and <em>N</em>AT and increase was observed in TRP, <em>5</em>-HTP, <em>5</em>-HT and <em>5</em>-HTOH in rat SC<em>N</em>. Daily pulses decreased with aging significantly for TRP, <em>5</em>-HT, <em>N</em>AS, MEL, <em>5</em>-HIAA, <em>5</em>-MIAA and <em>N</em>AT. We report here, the age-induced change in interactions between various <em>5</em>-HT metabolism components by middle age (12 m) changing further by 24 m. The daily rhythms persisted with aging for <em>N</em>AS, MEL and <em>5</em>-HTOH. Though, rhythms were abolished for TRP, <em>5</em>-HTP, <em>5</em>-HIAA, <em>5</em>-MIAA, <em>5</em>-MTOH and <em>N</em>AT differentially at 12 and 24 m. The MEL administration showed restoration in <em>5</em>-HT ratio with <em>5</em>-HTP, MEL and <em>5</em>-HTOH in 24 m and <em>N</em>AS and <em>5</em>-HIAA in 12 m SC<em>N</em>. Thus, MEL administration effects alterations of age-induced stoichiometry in levels and chronomics of serotonin metabolic network interactomes.