Tregs restrain dendritic cell autophagy to ameliorate autoimmunity
Abstract
Design of efficacious Treg-based therapies and establishment of clinical tolerance in autoimmune diseases have proven to be challenging. The clinical implementation of Treg immunotherapy has been hampered by various impediments related to the stability and isolation procedures of Tregs as well as the specific in vivo targets of Treg modalities. Herein, we have demonstrated that Foxp3 Tregs potently suppress autoimmune responses in vivo through inhibition of the autophagic machinery in DCs in a cytotoxic T-lymphocyte–associated protein 4–dependent (CTLA4-dependent) manner. Autophagy-deficient DCs exhibited reduced immunogenic potential and failed to prime autoantigen-specific CD4 T cells to mediate autoimmunity. Mechanistically, CTLA4 binding promoted activation of the PI3K/Akt/mTOR axis and FoxO1 nuclear exclusion in DCs, leading to decreased transcription of the autophagy component microtubule-associated protein 1 light chain 3β (Lc3b). Human DCs treated with CTLA4-Ig, a fusion protein composed of the Fc region of IgG1 and the extracellular domain of CTLA4 (also known as abatacept, marketed as Orencia), demonstrated reduced levels of autophagosome formation, while DCs from CTLA4-Ig–treated rheumatoid arthritis patients displayed diminished LC3B transcripts. Collectively, our data identify the canonical autophagy pathway in DCs as a molecular target of Foxp3 Treg–mediated suppression that leads to amelioration of autoimmune responses. These findings may pave the way for the development of therapeutic protocols that exploit Tregs for the treatment of autoimmunity as well as diseases in which disturbed tolerance is a common denominator.
Acknowledgments
We would like to thank Katerina Hatziioannou, Marianna Ioannou, Katerina Girtzimanaki, Eirini Kirmizi, and Nikos Paschalidis for assisting with experiments; George Chamilos for providing technical advice; Anastasia Apostolidou and Arianna Gavriil for cell sorting; nurses Giota Rapsomaniki and Kalliopi Klavdianou for patient care; Ismini Kloukina for histology preparations; Stamatis Pagakis and Eleni Rigana for providing assistance with confocal microscopy and quantification of confocal images; Watanebe Masashi for assisting with the B7.1 B7.2 double-knockout samples; Katrin Klocke for assisting with the Rosa26-Cre Ctla4fl/fl mice; Emilio Hirsch and Alessandra Chigo for providing the Pik3cg–/– mice; and Christos Tsatsanis for providing the Akt1–/– mice. This work was supported by grants from the Greek General Secretariat of Research and Technology (Aristeia II 3468 to PV), European Union project Innovative Medicine Initiative 6 (BeTheCure, contract number 115142-2, to PV and DB). TC is supported by the Deutsche Forschungsgemeinschaft (CH279/5-1 and SFB655). TA is supported by the European Commission FP7 programme Translational Potential (TransPOT; EC contract number 285948) and IKY Fellowships of Excellence for Postgraduate Studies in Greece — Siemens Programme. KC is supported by NIH grants ({"type":"entrez-nucleotide","attrs":{"text":"DK103788","term_id":"187403994","term_text":"DK103788"}}DK103788, {"type":"entrez-nucleotide","attrs":{"text":"DK093668","term_id":"187545272","term_text":"DK093668"}}DK093668, {"type":"entrez-nucleotide","attrs":{"text":"HL123340","term_id":"1051707559","term_text":"HL123340"}}HL123340) and is a Burroughs Welcome Fund Investigator in the Pathogenesis of Infectious Diseases.
Footnotes
Conflict of interest: The authors have declared that no conflict of interest exists.
Reference information:J Clin Invest. 2017;127(7):2789–2804.https://doi.org/10.1172/JCI92079.
References
- 1. Littman DR, Rudensky AYTh17 and regulatory T cells in mediating and restraining inflammation. Cell. 2010;140(6):845–858. doi: 10.1016/j.cell.2010.02.021.] [[PubMed][Google Scholar]
- 2. Sakaguchi S, Yamaguchi T, Nomura T, Ono MRegulatory T cells and immune tolerance. Cell. 2008;133(5):775–787. doi: 10.1016/j.cell.2008.05.009.] [[PubMed][Google Scholar]
- 3. Onishi Y, Fehervari Z, Yamaguchi T, Sakaguchi SFoxp3 natural regulatory T cells preferentially form aggregates on dendritic cells in vitro and actively inhibit their maturation. Proc Natl Acad Sci U S A. 2008;105(29):10113–10118. doi: 10.1073/pnas.0711106105.] [[Google Scholar]
- 4. Tang Q, et al Visualizing regulatory T cell control of autoimmune responses in nonobese diabetic mice. Nat Immunol. 2006;7(1):83–92. doi: 10.1038/ni1289.] [[Google Scholar]
- 5. Matheu MP, et al Imaging regulatory T cell dynamics and CTLA4-mediated suppression of T cell priming. Nat Commun. 2015;6:6219. [Google Scholar]
- 6. Tadokoro CE, et al Regulatory T cells inhibit stable contacts between CD4 T cells and dendritic cells in vivo. J Exp Med. 2006;203(3):505–511. doi: 10.1084/jem.20050783.] [[Google Scholar]
- 7. Wing K, et al CTLA-4 control over Foxp3 regulatory T cell function. Science. 2008;322(5899):271–275. doi: 10.1126/science.1160062.] [[PubMed][Google Scholar]
- 8. Deretic VAutophagy: an emerging immunological paradigm. J Immunol. 2012;189(1):15–20. doi: 10.4049/jimmunol.1102108.] [[Google Scholar]
- 9. Qureshi OS, et al Trans-endocytosis of CD80 and CD86: a molecular basis for the cell-extrinsic function of CTLA-4. Science. 2011;332(6029):600–603. doi: 10.1126/science.1202947.] [[Google Scholar]
- 10. Munn DH, Sharma MD, Mellor ALLigation of B7-1/B7-2 by human CD4 T cells triggers indoleamine 2,3-dioxygenase activity in dendritic cells. J Immunol. 2004;172(7):4100–4110. doi: 10.4049/jimmunol.172.7.4100.] [[PubMed][Google Scholar]
- 11. Grohmann U, et al CTLA-4-Ig regulates tryptophan catabolism in vivo. Nat Immunol. 2002;3(11):1097–1101. doi: 10.1038/ni846.] [[PubMed][Google Scholar]
- 12. Puccetti P, Grohmann UIDO and regulatory T cells: a role for reverse signalling and non-canonical NF-κB activation. Nat Rev Immunol. 2007;7(10):817–823. doi: 10.1038/nri2163.] [[PubMed][Google Scholar]
- 13. Levine B, Deretic VUnveiling the roles of autophagy in innate and adaptive immunity. Nat Rev Immunol. 2007;7(10):767–777. doi: 10.1038/nri2161.] [[PubMed][Google Scholar]
- 14. Nedjic J, Aichinger M, Emmerich J, Mizushima N, Klein LAutophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance. Nature. 2008;455(7211):396–400. doi: 10.1038/nature07208.] [[PubMed][Google Scholar]
- 15. Pua HH, Dzhagalov I, Chuck M, Mizushima N, He YWA critical role for the autophagy gene Atg5 in T cell survival and proliferation. J Exp Med. 2007;204(1):25–31. doi: 10.1084/jem.20061303.] [[Google Scholar]
- 16. Espert L, et al Autophagy is involved in T cell death after binding of HIV-1 envelope proteins to CXCR4. J Clin Invest. 2006;116(8):2161–2172. doi: 10.1172/JCI26185.] [[Google Scholar]
- 17. Dengjel J, et al Autophagy promotes MHC class II presentation of peptides from intracellular source proteins. Proc Natl Acad Sci U S A. 2005;102(22):7922–7927. doi: 10.1073/pnas.0501190102.] [[Google Scholar]
- 18. Paludan C, et al Endogenous MHC class II processing of a viral nuclear antigen after autophagy. Science. 2005;307(5709):593–596. doi: 10.1126/science.1104904.] [[PubMed][Google Scholar]
- 19. Schmid D, Pypaert M, Münz CAntigen-loading compartments for major histocompatibility complex class II molecules continuously receive input from autophagosomes. Immunity. 2007;26(1):79–92. doi: 10.1016/j.immuni.2006.10.018.] [[Google Scholar]
- 20. Lee HK, et al In vivo requirement for Atg5 in antigen presentation by dendritic cells. Immunity. 2010;32(2):227–239. doi: 10.1016/j.immuni.2009.12.006.] [[Google Scholar]
- 21. Aichinger M, Wu C, Nedjic J, Klein LMacroautophagy substrates are loaded onto MHC class II of medullary thymic epithelial cells for central tolerance. J Exp Med. 2013;210(2):287–300. doi: 10.1084/jem.20122149.] [[Google Scholar]
- 22. Alissafi T, et al De novo-induced self-antigen-specific Foxp3+ regulatory T cells impair the accumulation of inflammatory dendritic cells in draining lymph nodes. J Immunol. 2015;194(12):5812–5824. doi: 10.4049/jimmunol.1500111.] [[PubMed][Google Scholar]
- 23. Menssen A, et al SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data. BMC Genomics. 2009;10:98. [Google Scholar]
- 24. Fujita N, Itoh T, Omori H, Fukuda M, Noda T, Yoshimori TThe Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell. 2008;19(5):2092–2100. doi: 10.1091/mbc.E07-12-1257.] [[Google Scholar]
- 25. Mizushima N, et al Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate. J Cell Sci. 2003;116(pt 9):1679–1688.[PubMed][Google Scholar]
- 26. Klionsky DJ, et al Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Autophagy. 2016;12(1):1–222. doi: 10.1080/15548627.2015.1100356.] [[Google Scholar]
- 27. Kabeya Y, et al LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J. 2000;19(21):5720–5728. doi: 10.1093/emboj/19.21.5720.] [[Google Scholar]
- 28. Pankiv S, et al p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J Biol Chem. 2007;282(33):24131–24145. doi: 10.1074/jbc.M702824200.] [[PubMed][Google Scholar]
- 29. Ponpuak M, et al Delivery of cytosolic components by autophagic adaptor protein p62 endows autophagosomes with unique antimicrobial properties. Immunity. 2010;32(3):329–341. doi: 10.1016/j.immuni.2010.02.009.] [[Google Scholar]
- 30. Martina JA, Chen Y, Gucek M, Puertollano RMTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB. Autophagy. 2012;8(6):903–914. doi: 10.4161/auto.19653.] [[Google Scholar]
- 31. Ganley IG, Lam du H, Wang J, Ding X, Chen S, Jiang XULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy. J Biol Chem. 2009;284(18):12297–12305. doi: 10.1074/jbc.M900573200.] [[Google Scholar]
- 32. Reggiori F, Komatsu M, Finley K, Simonsen ASelective types of autophagy. Int J Cell Biol. 2012;2012:156272. [Google Scholar]
- 33. Hubbard-Lucey VM, et al Autophagy gene Atg16L1 prevents lethal T cell alloreactivity mediated by dendritic cells. Immunity. 2014;41(4):579–591. doi: 10.1016/j.immuni.2014.09.011.] [[Google Scholar]
- 34. Petherick KJ, et al Pharmacological inhibition of ULK1 kinase blocks mammalian target of rapamycin (mTOR)-dependent autophagy. J Biol Chem. 2015;290(48):28726. doi: 10.1074/jbc.A114.627778.] [[Google Scholar]
- 35. Shevach EMMechanisms of Foxp3 T regulatory cell-mediated suppression. Immunity. 2009;30(5):636–645. doi: 10.1016/j.immuni.2009.04.010.] [[PubMed][Google Scholar]
- 36. Klocke K, Sakaguchi S, Holmdahl R, Wing KInduction of autoimmune disease by deletion of CTLA-4 in mice in adulthood. Proc Natl Acad Sci U S A. 2016;113(17):E2383–E2392. doi: 10.1073/pnas.1603892113.] [[Google Scholar]
- 37. Mizushima N, Yoshimori T, Levine BMethods in mammalian autophagy research. Cell. 2010;140(3):313–326. doi: 10.1016/j.cell.2010.01.028.] [[Google Scholar]
- 38. Patrucco E, et al PI3Kgamma modulates the cardiac response to chronic pressure overload by distinct kinase-dependent and -independent effects. Cell. 2004;118(3):375–387. doi: 10.1016/j.cell.2004.07.017.] [[PubMed][Google Scholar]
- 39. Koorella C, Nair JR, Murray ME, Carlson LM, Watkins SK, Lee KPNovel regulation of CD80/CD86-induced phosphatidylinositol 3-kinase signaling by NOTCH1 protein in interleukin-6 and indoleamine 2,3-dioxygenase production by dendritic cells. J Biol Chem. 2014;289(11):7747–7762. doi: 10.1074/jbc.M113.519686.] [[Google Scholar]
- 40. Füllgrabe J, Klionsky DJ, Joseph BThe return of the nucleus: transcriptional and epigenetic control of autophagy. Nat Rev Mol Cell Biol. 2014;15(1):65–74.[PubMed][Google Scholar]
- 41. Fiorentino L, et al Loss of TIMP3 underlies diabetic nephropathy via FoxO1/STAT1 interplay. EMBO Mol Med. 2013;5(3):441–455. doi: 10.1002/emmm.201201475.] [[Google Scholar]
- 42. Prevoo ML, van ‘t Hof MA, Kuper HH, van Leeuwen MA, van de Putte LB, van Riel PL. Modified disease activity scores that include twenty-eight-joint counts. Development and validation in a prospective longitudinal study of patients with rheumatoid arthritis. Arthritis Rheum. 1995;38(1):44–48. doi: 10.1002/art.1780380107.] [[PubMed]
- 43. Schmid D, Munz CInnate and adaptive immunity through autophagy. Immunity. 2007;27(1):11–21. doi: 10.1016/j.immuni.2007.07.004.] [[PubMed][Google Scholar]
- 44. Bhattacharya A, Parillon X, Zeng S, Han S, Eissa NTDeficiency of autophagy in dendritic cells protects against experimental autoimmune encephalomyelitis. J Biol Chem. 2014;289(38):26525–26532. doi: 10.1074/jbc.M114.575860.] [[Google Scholar]
- 45. Kanayama M, Danzaki K, He YW, Shinohara MLLung inflammation stalls Th17-cell migration en route to the central nervous system during the development of experimental autoimmune encephalomyelitis. Int Immunol. 2016;28(9):463–469. doi: 10.1093/intimm/dxw013.] [[Google Scholar]
- 46. Miyazaki T, et al Mice lacking H2-M complexes, enigmatic elements of the MHC class II peptide-loading pathway. Cell. 1996;84(4):531–541. doi: 10.1016/S0092-8674(00)81029-6.] [[PubMed][Google Scholar]
- 47. Martin WD, Hicks GG, Mendiratta SK, Leva HI, Ruley HE, Van Kaer LH2-M mutant mice are defective in the peptide loading of class II molecules, antigen presentation, and T cell repertoire selection. Cell. 1996;84(4):543–550. doi: 10.1016/S0092-8674(00)81030-2.] [[PubMed][Google Scholar]
- 48. Slavin AJ, et al Requirement for endocytic antigen processing and influence of invariant chain and H-2M deficiencies in CNS autoimmunity. J Clin Invest. 2001;108(8):1133–1139. doi: 10.1172/JCI13360.] [[Google Scholar]
- 49. Tompkins SM, Padilla J, Dal Canto MC, Ting JP, Van Kaer L, Miller SDDe novo central nervous system processing of myelin antigen is required for the initiation of experimental autoimmune encephalomyelitis. J Immunol. 2002;168(8):4173–4183. doi: 10.4049/jimmunol.168.8.4173.] [[PubMed][Google Scholar]
- 50. Roche PA, Furuta KThe ins and outs of MHC class II-mediated antigen processing and presentation. Nat Rev Immunol. 2015;15(4):203–216. doi: 10.1038/nri3818.] [[Google Scholar]
- 51. Liu H, et al Ubiquitin ligase MARCH 8 cooperates with CD83 to control surface MHC II expression in thymic epithelium and CD4 T cell selection. J Exp Med. 2016;213(9):1695–1703. doi: 10.1084/jem.20160312.] [[Google Scholar]
- 52. Patakas A, et al Abatacept inhibits T cell priming by inducing of a unique transcriptional profile that reduces their ability to activate antigen presenting cells. Arthritis Rheumatol. 2016;68(3):627–638. doi: 10.1002/art.39470.] [[PubMed][Google Scholar]
- 53. Codogno P, Mehrpour M, Proikas-Cezanne TCanonical and non-canonical autophagy: variations on a common theme of self-eating? Nat Rev Mol Cell Biol. 2011;13(1):7–12. doi: 10.1038/nrn3125.] [[PubMed][Google Scholar]
- 54. Carman JA, et al Abatacept does not induce direct gene expression changes in antigen-presenting cells. J Clin Immunol. 2009;29(4):479–489. doi: 10.1007/s10875-009-9282-z.] [[PubMed][Google Scholar]
- 55. Zhou J, et al FOXO3 induces FOXO1-dependent autophagy by activating the AKT1 signaling pathway. Autophagy. 2012;8(12):1712–1723. doi: 10.4161/auto.21830.] [[Google Scholar]
- 56. Sengupta A, Molkentin JD, Yutzey KEFoxO transcription factors promote autophagy in cardiomyocytes. J Biol Chem. 2009;284(41):28319–28331. doi: 10.1074/jbc.M109.024406.] [[Google Scholar]
- 57. Dejean AS, et al Transcription factor Foxo3 controls the magnitude of T cell immune responses by modulating the function of dendritic cells. Nat Immunol. 2009;10(5):504–513. doi: 10.1038/ni.1729.] [[Google Scholar]
- 58. Fallarino F, et al CTLA-4-Ig activates forkhead transcription factors and protects dendritic cells from oxidative stress in nonobese diabetic mice. J Exp Med. 2004;200(8):1051–1062. doi: 10.1084/jem.20040942.] [[Google Scholar]
- 59. Nakae J, Park BC, Accili DInsulin stimulates phosphorylation of the forkhead transcription factor FKHR on serine 253 through a Wortmannin-sensitive pathway. J Biol Chem. 1999;274(23):15982–15985. doi: 10.1074/jbc.274.23.15982.] [[PubMed][Google Scholar]
- 60. Wang S, et al FoxO1-mediated autophagy is required for NK cell development and innate immunity. Nat Commun. 2016;7:11023. [Google Scholar]
- 61. Ioannou M, et al Crucial role of granulocytic myeloid-derived suppressor cells in the regulation of central nervous system autoimmune disease. J Immunol. 2012;188(3):1136–1146. doi: 10.4049/jimmunol.1101816.] [[PubMed][Google Scholar]
- 62. Lutz MB, et al An advanced culture method for generating large quantities of highly pure dendritic cells from mouse bone marrow. J Immunol Methods. 1999;223(1):77–92. doi: 10.1016/S0022-1759(98)00204-X.] [[PubMed][Google Scholar]
- 63. Arnett FC, et al The American Rheumatism Association 1987 revised criteria for the classification of rheumatoid arthritis. Arthritis Rheum. 1988;31(3):315–324. doi: 10.1002/art.1780310302.] [[PubMed][Google Scholar]






