Plant purine nucleoside catabolism employs a guanosine deaminase required for the generation of xanthosine in Arabidopsis.
Journal: 2014/August - Plant Cell
ISSN: 1532-298X
Abstract:
Purine nucleotide catabolism is common to most organisms and involves a guanine deaminase to convert guanine to xanthine in animals, invertebrates, and microorganisms. Using metabolomic analysis of mutants, we demonstrate that Arabidopsis thaliana uses an alternative catabolic route employing a highly specific guanosine deaminase (GSDA) not reported from any organism so far. The enzyme is ubiquitously expressed and deaminates exclusively guanosine and 2'-deoxyguanosine but no other aminated purines, pyrimidines, or pterines. GSDA belongs to the cytidine/deoxycytidylate deaminase family of proteins together with a deaminase involved in riboflavin biosynthesis, the chloroplastic tRNA adenosine deaminase Arg and a predicted tRNA-specific adenosine deaminase 2 in A. thaliana. GSDA is conserved in plants, including the moss Physcomitrella patens, but is absent in the algae and outside the plant kingdom. Our data show that xanthosine is exclusively generated through the deamination of guanosine by GSDA in A. thaliana, excluding other possible sources like the dephosphorylation of xanthosine monophosphate. Like the nucleoside hydrolases NUCLEOSIDE HYDROLASE1 (NSH1) and NSH2, GSDA is located in the cytosol, indicating that GMP catabolism to xanthine proceeds in a mostly cytosolic pathway via guanosine and xanthosine. Possible implications for the biosynthetic route of purine alkaloids (caffeine and theobromine) and ureides in other plants are discussed.
Relations:
Content
Citations
(8)
References
(39)
Drugs
(3)
Chemicals
(5)
Genes
(1)
Organisms
(2)
Processes
(2)
Affiliates
(1)
Similar articles
Articles by the same authors
Discussion board
Plant Cell 25(10): 4101-4109

Plant Purine Nucleoside Catabolism Employs a Guanosine Deaminase Required for the Generation of Xanthosine in <em>Arabidopsis</em><sup>[W]</sup>

Department of Plant Biochemistry, Dahlem Centre of Plant Sciences, Freie Universität Berlin, 14195 Berlin, Germany
Address correspondence to ed.nilreb-uf.tadez@ettiwpc.
The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) is: Claus-Peter Witte (ed.nilreb-uf.tadez@ettiwpc).
Online version contains Web-only data.
www.plantcell.org/cgi/doi/10.1105/tpc.113.117184
www.plantcell.org/cgi/doi/10.1105/tpc.113.117184
Received 2013 Aug 7; Revised 2013 Sep 19; Accepted 2013 Sep 27.

Abstract

Purine nucleotide catabolism is common to most organisms and involves a guanine deaminase to convert guanine to xanthine in animals, invertebrates, and microorganisms. Using metabolomic analysis of mutants, we demonstrate that Arabidopsis thaliana uses an alternative catabolic route employing a highly specific guanosine deaminase (GSDA) not reported from any organism so far. The enzyme is ubiquitously expressed and deaminates exclusively guanosine and 2’-deoxyguanosine but no other aminated purines, pyrimidines, or pterines. GSDA belongs to the cytidine/deoxycytidylate deaminase family of proteins together with a deaminase involved in riboflavin biosynthesis, the chloroplastic tRNA adenosine deaminase Arg and a predicted tRNA-specific adenosine deaminase 2 in A. thaliana. GSDA is conserved in plants, including the moss Physcomitrella patens, but is absent in the algae and outside the plant kingdom. Our data show that xanthosine is exclusively generated through the deamination of guanosine by GSDA in A. thaliana, excluding other possible sources like the dephosphorylation of xanthosine monophosphate. Like the nucleoside hydrolases NUCLEOSIDE HYDROLASE1 (NSH1) and NSH2, GSDA is located in the cytosol, indicating that GMP catabolism to xanthine proceeds in a mostly cytosolic pathway via guanosine and xanthosine. Possible implications for the biosynthetic route of purine alkaloids (caffeine and theobromine) and ureides in other plants are discussed.

Abstract

Acknowledgments

This research was funded by the Deutsche Forschungsgemeinschaft (Grant DFG WI3411/1-2) and the German Academic Exchange Service from funds of the German Federal Ministry for Education and Research, program German-Chinese Research Groups.

Acknowledgments

AUTHOR CONTRIBUTIONS

K.D. planned and conducted all experiments. C.-P.W. was responsible for the experimental outline, bioinformatic analyses, and writing the article.

AUTHOR CONTRIBUTIONS

Notes

Glossary

GSDAguanosine deaminase
GDAguanine deaminase
XMPto be defined
YFPyellow fluorescent protein
GFPgreen fluorescent protein
GUSβ-glucuronidase
IMPto be defined
CFPcyan fluorescent protein
Notes

Glossary

GSDAguanosine deaminase
GDAguanine deaminase
XMPto be defined
YFPyellow fluorescent protein
GFPgreen fluorescent protein
GUSβ-glucuronidase
IMPto be defined
CFPcyan fluorescent protein
Glossary
Collaboration tool especially designed for Life Science professionals.Drag-and-drop any entity to your messages.