Parallel analysis of oligodeoxyribonucleotide (oligonucleotide) interactions. I. Analysis of factors influencing oligonucleotide duplex formation.
Journal: 1992/June - Nucleic Acids Research
ISSN: 0305-1048
PUBMED: 1579458
Abstract:
A novel method for the analysis of oligonucleotide-oligonucleotide interactions is described. Oligonucleotides of different sequence are synthesised in situ as stripes on the surface of a glass slide (see accompanying paper). Multiple hybridizations are then carried out on each oligonucleotide simultaneously to determine the dependence of oligonucleotide duplex formation on duplex length, base composition, hybridisation solvent and sequence complexity.
Relations:
Content
Citations
(27)
References
(12)
Chemicals
(3)
Processes
(3)
Affiliates
(1)
Similar articles
Articles by the same authors
Discussion board
Nucleic Acids Res 20(7): 1675-1678

Parallel analysis of oligodeoxyribonucleotide (oligonucleotide) interactions. I. Analysis of factors influencing oligonucleotide duplex formation.

Abstract

A novel method for the analysis of oligonucleotide-oligonucleotide interactions is described. Oligonucleotides of different sequence are synthesised in situ as stripes on the surface of a glass slide (see accompanying paper). Multiple hybridizations are then carried out on each oligonucleotide simultaneously to determine the dependence of oligonucleotide duplex formation on duplex length, base composition, hybridisation solvent and sequence complexity.

Full text

Full text is available as a scanned copy of the original print version. Get a printable copy (PDF file) of the complete article (833K), or click on a page image below to browse page by page. Links to PubMed are also available for Selected References.

Images in this article

Click on the image to see a larger version.

Selected References

These references are in PubMed. This may not be the complete list of references from this article.
  • Saiki RK, Walsh PS, Levenson CH, Erlich HA. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc Natl Acad Sci U S A. 1989 Aug;86(16):6230–6234.[PMC free article] [PubMed] [Google Scholar]
  • Zhang Y, Coyne MY, Will SG, Levenson CH, Kawasaki ES. Single-base mutational analysis of cancer and genetic diseases using membrane bound modified oligonucleotides. Nucleic Acids Res. 1991 Jul 25;19(14):3929–3933.[PMC free article] [PubMed] [Google Scholar]
  • Wood WI, Gitschier J, Lasky LA, Lawn RM. Base composition-independent hybridization in tetramethylammonium chloride: a method for oligonucleotide screening of highly complex gene libraries. Proc Natl Acad Sci U S A. 1985 Mar;82(6):1585–1588.[PMC free article] [PubMed] [Google Scholar]
  • Shapiro JT, Stannard BS, Felsenfeld G. The binding of small cations to deoxyribonucleic acid. Nucleotide specificity. Biochemistry. 1969 Aug;8(8):3233–3241. [PubMed] [Google Scholar]
  • Melchior WB, Jr, Von Hippel PH. Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA. Proc Natl Acad Sci U S A. 1973 Feb;70(2):298–302.[PMC free article] [PubMed] [Google Scholar]
  • Wetmur JG, Davidson N. Kinetics of renaturation of DNA. J Mol Biol. 1968 Feb 14;31(3):349–370. [PubMed] [Google Scholar]
  • Chang CT, Hain TC, Hutton JR, Wetmur JG. Effects of microscopic and macroscopic viscosity on the rate of renaturation of DNA. Biopolymers. 1974;13(9):1847–1858. [PubMed] [Google Scholar]
  • Orosz JM, Wetmur JG. DNA melting temperatures and renaturation rates in concentrated alkylammonium salt solutions. Biopolymers. 1977 Jun;16(6):1183–1199. [PubMed] [Google Scholar]
  • Van Ness J, Chen L. The use of oligodeoxynucleotide probes in chaotrope-based hybridization solutions. Nucleic Acids Res. 1991 Oct 11;19(19):5143–5151.[PMC free article] [PubMed] [Google Scholar]
  • Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. [PubMed] [Google Scholar]
  • Jacobs KA, Rudersdorf R, Neill SD, Dougherty JP, Brown EL, Fritsch EF. The thermal stability of oligonucleotide duplexes is sequence independent in tetraalkylammonium salt solutions: application to identifying recombinant DNA clones. Nucleic Acids Res. 1988 May 25;16(10):4637–4650.[PMC free article] [PubMed] [Google Scholar]
  • Astell CR, Smith M. Synthesis and properties of oligonucleotide--cellulose columns. Biochemistry. 1972 Oct 24;11(22):4114–4120. [PubMed] [Google Scholar]
Department of Biochemistry, University of Oxford, UK.
Department of Biochemistry, University of Oxford, UK.
Abstract
A novel method for the analysis of oligonucleotide-oligonucleotide interactions is described. Oligonucleotides of different sequence are synthesised in situ as stripes on the surface of a glass slide (see accompanying paper). Multiple hybridizations are then carried out on each oligonucleotide simultaneously to determine the dependence of oligonucleotide duplex formation on duplex length, base composition, hybridisation solvent and sequence complexity.
Collaboration tool especially designed for Life Science professionals.Drag-and-drop any entity to your messages.