MYCNOS functions as an antisense RNA regulating MYCN.
Journal: 2016/May - RNA Biology
ISSN: 1555-8584
Abstract:
Amplification or overexpression of neuronal MYC (MYCN) is associated with poor prognosis of human neuroblastoma. Three isoforms of the MYCN protein have been described as well as a protein encoded by an antisense transcript (MYCNOS) that originates from the opposite strand at the MYCN locus. Recent findings suggest that some antisense long non-coding RNAs (lncRNAs) can play a role in epigenetically regulating gene expression. Here we report that MYCNOS transcripts function as a modulator of the MYCN locus, affecting MYCN promoter usage and recruiting various proteins, including the Ras GTPase-activating protein-binding protein G3BP1, to the upstream MYCN promoter. Overexpression of MYCNOS results in a reduction of upstream MYCN promoter usage and increased MYCN expression, suggesting that the protein-coding MYCNOS also functions as a regulator of MYCN ultimately controlling MYCN transcriptional variants. The observations presented here demonstrate that protein-coding transcripts can regulate gene transcription and can tether regulatory proteins to target loci.
Relations:
Content
Citations
(7)
References
(28)
Grants
(1)
Diseases
(1)
Drugs
(1)
Chemicals
(12)
Genes
(2)
Organisms
(1)
Processes
(2)
Anatomy
(1)
Affiliates
(1)
Similar articles
Articles by the same authors
Discussion board
RNA Biol 12(8): 893-899

<em>MYCNOS</em> functions as an antisense RNA regulating <em>MYCN</em>

Supplemental_Materials.zip:
Click here to view.(152 bytes, zip)
Molecular and Experimental Medicine; The Scripps Research Institute; La Jolla, CA USA
The University of New South Wales; Biotechnology and Biomedical Sciences; Sydney, NSW, Australia
These authors equally contributed to this work.
Correspondence to: Kevin V Morris; Email: ude.sppircs@sirromk
Received 2015 May 8; Revised 2015 Jun 7; Accepted 2015 Jun 14.

Abstract

Amplification or overexpression of neuronal MYC (MYCN) is associated with poor prognosis of human neuroblastoma. Three isoforms of the MYCN protein have been described as well as a protein encoded by an antisense transcript (MYCNOS) that originates from the opposite strand at the MYCN locus. Recent findings suggest that some antisense long non-coding RNAs (lncRNAs) can play a role in epigenetically regulating gene expression. Here we report that MYCNOS transcripts function as a modulator of the MYCN locus, affecting MYCN promoter usage and recruiting various proteins, including the Ras GTPase-activating protein-binding protein G3BP1, to the upstream MYCN promoter. Overexpression of MYCNOS results in a reduction of upstream MYCN promoter usage and increased MYCN expression, suggesting that the protein-coding MYCNOS also functions as a regulator of MYCN ultimately controlling MYCN transcriptional variants. The observations presented here demonstrate that protein-coding transcripts can regulate gene transcription and can tether regulatory proteins to target loci.

Keywords: Transcriptional regulation, bidirectional promoter, neuroblastoma, RNA, G3BP1, MAP4
Abstract

References

  • 1. Bannasch D, Weis I, Schwab M.. Nmi protein interacts with regions that differ between MycN and Myc and is localized in the cytoplasm of neuroblastoma cells in contrast to nuclear MycN. Oncogene 1999; 18:6810-7; PMID:10597290; http://dx.doi.org/10.1038/sj.onc.1203090 [] [[PubMed]
  • 2. Wenzel A, Cziepluch C, Hamann U, Schurmann J, Schwab M.. The N-Myc oncoprotein is associated in vivo with the phosphoprotein Max(p20/22) in human neuroblastoma cells. Embo J 1991; 10:3703-12; PMID:1935896
  • 3. Gherardi S, Valli E, Erriquez D, Perini G.. MYCN-mediated transcriptional repression in neuroblastoma: the other side of the coin. Front Oncol 2013; 3:42; PMID:23482921; http://dx.doi.org/10.3389/fonc.2013.00042 ] [
  • 4. Armstrong BC, Krystal GW. Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc. Cell Growth Differ 1992; 3:385-90 [[PubMed]
  • 5. Suenaga Y, Islam SM, Alagu J, Kaneko Y, Kato M, Tanaka Y, Kawana H, Hossain S, Matsumoto D, Yamamoto M, et al. NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3beta resulting in the stabilization of MYCN in human neuroblastomas. PLoS Genet 2014; 10:e1003996; PMID:24391509; http://dx.doi.org/10.1371/journal.pgen.1003996 ] [
  • 6. Jacobs JF, van Bokhoven H, van Leeuwen FN, Hulsbergen-van de Kaa CA, de Vries IJ, Adema GJ, Hoogerbrugge PM, de Brouwer AP.. Regulation of MYCN expression in human neuroblastoma cells. BMC Cancer 2009; 9:239; PMID:19615087; http://dx.doi.org/10.1186/1471-2407-9-239 ] [
  • 7. Morris KV, Mattick JS.. The rise of regulatory RNA. Nat Rev Genet 2014; 464:1071-6; PMID:24776770
  • 8. Weinberg MS, Morris KV.. Long non-coding RNA targeting and transcriptional de-repression. Nucleic Acid Thera 2013; 23:9-14; PMID:23391414
  • 9. Hawkins PG, Morris KV.. Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5. Transcription 2010; 1:165-75; PMID:21151833; http://dx.doi.org/10.4161/trns.1.3.13332 ] [
  • 10. Johnsson P, Ackley A, Vidarsdottir L, Lui WO, Corcoran M, Grander D, Morris KV.. A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells. Nat Struct Mol Biol 2013; 20:440-6; PMID:23435381; http://dx.doi.org/10.1038/nsmb.2516 ] [
  • 11. Morris KV, Santoso S, Turner AM, Pastori C, Hawkins PG.. Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet 2008; 4:e1000258; PMID:19008947; http://dx.doi.org/10.1371/journal.pgen.1000258 ] [
  • 12. Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP, Cui H.. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008; 451:202-6; PMID:18185590; http://dx.doi.org/10.1038/nature06468 ] [
  • 13. Sehgal L, Mathur R, Braun FK, Wise JF, Berkova Z, Neelapu S, Kwak LW, Samaniego F.. FAS-antisense 1 lncRNA and production of soluble versus membrane Fas in B-cell lymphoma. Leukemia 2014; 28(12):2376-87; PMID:24811343
  • 14. Lal A, Kim HH, Abdelmohsen K, Kuwano Y, Pullmann R Jr., Srikantan S, Subrahmanyam R, Martindale JL, Yang X, Ahmed F, et al. p16(INK4a) translation suppressed by miR-24. PLoS One 2008; 3:e1864; PMID:18365017; http://dx.doi.org/10.1371/journal.pone.0001864 ] [
  • 15. Ackley A, Lenox A, Stapleton K, Knowling S, Lu T, Sabir KS, Vogt PK, Morris KV.. An Algorithm for Generating Small RNAs Capable of Epigenetically Modulating Transcriptional Gene Silencing and Activation in Human Cells. Mol Ther Nucleic Acids 2013; 2:e104; PMID:23839098; http://dx.doi.org/10.1038/mtna.2013.33 ] [
  • 16. Turner AM, Morris KV.. Controlling transcription with noncoding RNAs in mammalian cells. Biotechniques 2010; 48:ix-xvi; PMID:20569216; http://dx.doi.org/10.2144/000113442 [] [[PubMed]
  • 17. Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010; 464:1071-6; PMID:20393566; http://dx.doi.org/10.1038/nature08975 ] [
  • 18. Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A 2009; 106:11667-72; PMID:19571010; http://dx.doi.org/10.1073/pnas.0904715106 ] [
  • 19. Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, Khalil AM, Zuk O, Amit I, Rabani M, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010; 142:409-19; PMID:20673990; http://dx.doi.org/10.1016/j.cell.2010.06.040 ] [
  • 20. Jeffery L, Nakielny S.. Components of the DNA methylation system of chromatin control are RNA-binding proteins. J Biol Chem 2004; 279:49479-87; PMID:15342650; http://dx.doi.org/10.1074/jbc.M409070200 [] [[PubMed]
  • 21. Weinberg MS, Villeneuve LM, Ehsani A, Amarzguioui M, Aagaard L, Chen ZX, Riggs AD, Rossi JJ, Morris KV.. The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells. RNA 2006; 12:256-62; PMID:16373483; http://dx.doi.org/10.1261/rna.2235106 ] [
  • 22. Modarresi F, Faghihi MA, Lopez-Toledano MA, Fatemi RP, Magistri M, Brothers SP, van der Brug MP, Wahlestedt C.. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. Nat Biotechnol 2012; 30:453-9; PMID:22446693; http://dx.doi.org/10.1038/nbt.2158 ] [
  • 23. Tanaka S, Tajiri T, Noguchi S, Shono K, Ihara K, Hara T, Suita S.. Clinical significance of a highly sensitive analysis for gene dosage and the expression level of MYCN in neuroblastoma. J Pediat Surg 2004; 39:63-8; PMID:14694373; http://dx.doi.org/10.1016/j.jpedsurg.2003.09.015 [] [[PubMed]
  • 24. Stanton LW, Bishop JM.. Alternative processing of RNA transcribed from NMYC. Mol Cell Biol 1987; 7:4266-72; PMID:3437890
  • 25. Liu PY, Erriquez D, Marshall GM, Tee AE, Polly P, Wong M, Liu B, Bell JL, Zhang XD, Milazzo G, et al. Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression. J Natl Cancer Inst 2014; 106:pii: dju113; PMID:24906397 [[PubMed]
  • 26. Grinkevich VV, Nikulenkov F, Shi Y, Enge M, Bao W, Maljukova A, Gluch A, Kel A, Sangfelt O, Selivanova G.. Ablation of key oncogenic pathways by RITA-reactivated p53 is required for efficient apoptosis. Cancer Cell 2009; 15:441-53; PMID:19411072; http://dx.doi.org/10.1016/j.ccr.2009.03.021 [] [[PubMed]
  • 27. Findlay GM, Yan L, Procter J, Mieulet V, Lamb RF.. A MAP4 kinase related to Ste20 is a nutrient-sensitive regulator of mTOR signalling. Biochem J 2007; 403:13-20; PMID:17253963; http://dx.doi.org/10.1042/BJ20061881 ] [
  • 28. Martina MR, Tenori E, Bizzarri M, Menichetti S, Caminati G, Procacci P.. The precise chemical-physical nature of the pharmacore in FK506 binding protein inhibition: ElteX, a New class of nanomolar FKBP12 ligands. J Med Chem 2013; 56:1041-51; PMID:23301792; http://dx.doi.org/10.1021/jm3015052 [] [[PubMed]
Collaboration tool especially designed for Life Science professionals.Drag-and-drop any entity to your messages.