Phytoremediation of arsenic (As) by water chestnut (Trapa natans) in a hydroponic system was studied. Plants were grown at two concentrations of arsenic, 1.28 mg/L and 10.80 mg/L, in a single metal solution. Scanning Electron Microscope-Energy Dispersive X-ray (SEM-EDX) confirmed highest arsenic concentration in the roots, followed by shoots and leaves. SEM-EDX also confirmed internalization of arsenic in T. natans and the damage caused due to arsenic exposure. Fourier Transform Infra Red Spectroscopy (FT-IRS) indicated that the binding characteristics of the arsenic ions involved the hydroxyl, amide, amino, and thiol groups in the biomass. Chlorophyll concentration decreased with increasing metal concentration and duration of exposure, but proline content increases with increasing concentration in the plant. Morphological changes were studied on the 3rd, 5th and 7th day. Unhealthy growth and chlorosis were found to be related with arsenic toxicity. From the above studies it is clear that T. natans can be used successfully for the removal of arsenic ions by a phytoremediation process.